mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
52 lines
1.3 KiB
YAML
52 lines
1.3 KiB
YAML
|
name: scoary
|
||
|
|
description: Use pangenome outputs for GWAS
|
||
|
|
keywords:
|
||
|
|
- gwas
|
||
|
|
- pangenome
|
||
|
|
- prokaryote
|
||
|
|
tools:
|
||
|
|
- scoary:
|
||
|
|
description: Microbial pan-GWAS using the output from Roary
|
||
|
|
homepage: https://github.com/AdmiralenOla/Scoary
|
||
|
|
documentation: https://github.com/AdmiralenOla/Scoary
|
||
|
|
tool_dev_url: https://github.com/AdmiralenOla/Scoary
|
||
|
|
doi: "10.1186/s13059-016-1108-8"
|
||
|
|
licence: ['GPL v3']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- genes:
|
||
|
|
type: file
|
||
|
|
description: A presence/absence matrix of genes in the pan-genome
|
||
|
|
pattern: "*.csv"
|
||
|
|
- traits:
|
||
|
|
type: file
|
||
|
|
description: A CSV file containing trait information per-sample
|
||
|
|
pattern: "*.csv"
|
||
|
|
- tree:
|
||
|
|
type: file
|
||
|
|
description: A Newick formtted tree for phylogenetic analyses
|
||
|
|
pattern: "*.{dnd,nwk,treefile}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- csv:
|
||
|
|
type: file
|
||
|
|
description: Gene associations in a CSV file per trait
|
||
|
|
pattern: "*.csv"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@rpetit3"
|