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nf-core_modules/tests/software/yara/mapper/test.yml

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Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic
2021-03-24 16:14:52 +00:00
- name: yara mapper test_yara_single_end
command: nextflow run tests/software/yara/mapper -entry test_yara_single_end -c tests/config/nextflow.config
tags:
- yara_single_end
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 08:10:52 +00:00
- yara/mapper
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic
2021-03-24 16:14:52 +00:00
- yara
files:
- path: output/yara/test.mapped.bam
- path: output/index/yara/yara.txt.size
md5sum: 063987b3c3f747be7d2b8043c9d91000
- path: output/index/yara/yara.lf.drs
md5sum: 55a54008ad1ba589aa210d2629c1df41
- path: output/index/yara/yara.lf.pst
md5sum: e8daba34298e99e42942435286f9b3f0
- path: output/index/yara/yara.sa.len
md5sum: 45677f66c28c79c02250ceb8b58645e8
- path: output/index/yara/yara.rid.concat
md5sum: 1e4e4c88ddeaf907a12f02f0d88367c5
- path: output/index/yara/yara.txt.concat
md5sum: 6074d1933c9e7e5ab05fa0def5ce28c0
- path: output/index/yara/yara.sa.val
md5sum: ce57cc82e2d3ae7b9824210f54168ce9
- path: output/index/yara/yara.sa.ind
md5sum: 464314583efb5f07260b0efecc29a1ce
- path: output/index/yara/yara.rid.limits
md5sum: 8b814661f30a0c9e350bfbcb454930ce
- path: output/index/yara/yara.lf.drp
md5sum: 3ef99a87a4e44513f46d42f4261f7842
- path: output/index/yara/yara.txt.limits
md5sum: 4480a068db603e4c9a27bc4fa9ceaf14
- path: output/index/yara/yara.lf.drv
md5sum: cf6408307fe9fd7f99c33f521bf95550
- path: output/index/yara/yara.fasta
md5sum: 6e9fe4042a72f2345f644f239272b7e6
- name: yara mapper test_yara_paired_end
command: nextflow run tests/software/yara/mapper -entry test_yara_paired_end -c tests/config/nextflow.config
tags:
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 08:10:52 +00:00
- yara/mapper
Add YARA module (#353) * Initial work on yara module * Adding in index basics * Updated the index stuff * Adding in proper tests * Fix editorconfig * Odd paths * that should do it * Fix tests * Fix tests * FFS * Once more * Mapping is not deterministic
2021-03-24 16:14:52 +00:00
- yara_paired_end
- yara
files:
- path: output/yara/test_2.mapped.bam
- path: output/yara/test_1.mapped.bam
- path: output/index/yara/yara.txt.size
md5sum: 063987b3c3f747be7d2b8043c9d91000
- path: output/index/yara/yara.lf.drs
md5sum: 55a54008ad1ba589aa210d2629c1df41
- path: output/index/yara/yara.lf.pst
md5sum: e8daba34298e99e42942435286f9b3f0
- path: output/index/yara/yara.sa.len
md5sum: 45677f66c28c79c02250ceb8b58645e8
- path: output/index/yara/yara.rid.concat
md5sum: 1e4e4c88ddeaf907a12f02f0d88367c5
- path: output/index/yara/yara.txt.concat
md5sum: 6074d1933c9e7e5ab05fa0def5ce28c0
- path: output/index/yara/yara.sa.val
md5sum: ce57cc82e2d3ae7b9824210f54168ce9
- path: output/index/yara/yara.sa.ind
md5sum: 464314583efb5f07260b0efecc29a1ce
- path: output/index/yara/yara.rid.limits
md5sum: 8b814661f30a0c9e350bfbcb454930ce
- path: output/index/yara/yara.lf.drp
md5sum: 3ef99a87a4e44513f46d42f4261f7842
- path: output/index/yara/yara.txt.limits
md5sum: 4480a068db603e4c9a27bc4fa9ceaf14
- path: output/index/yara/yara.lf.drv
md5sum: cf6408307fe9fd7f99c33f521bf95550
- path: output/index/yara/yara.fasta
md5sum: 6e9fe4042a72f2345f644f239272b7e6
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