nf-core_modules/modules/goat/taxonsearch/meta.yml

name: "goat_taxonsearch"
description: Query metadata for any taxon across the tree of life.
keywords:
  - public datasets
  - ncbi
  - genomes on a tree
tools:
  - goat:
      description: |
        goat-cli is a command line interface to query the
        Genomes on a Tree Open API.
      homepage: https://github.com/genomehubs/goat-cli
      documentation: https://github.com/genomehubs/goat-cli/wiki
      tool_dev_url: https://genomehubs.github.io/goat-cli/goat_cli/
      doi: "None"
      licence: ["MIT"]

input:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test']
  - taxon:
      type: val
      description: |
        The taxon to search. An NCBI taxon ID, or the name of a taxon at any rank.
  - taxa_file:
      type: file
      description: |
        A file of NCBI taxonomy ID's (tips) and/or binomial names. Each line
        should contain a single entry.File size is limited to 500 entries.
      pattern: "*.txt"

output:
  - meta:
      type: map
      description: |
        Groovy Map containing sample information
        e.g. [ id:'test', single_end:false ]
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
  - taxonsearch:
      type: file
      description: TSV file containing search results.
      pattern: "*.tsv"

authors:
  - "@alxndrdiaz"