2022-04-12 11:02:10 +02:00
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process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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2022-06-29 12:37:38 +02:00
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withName: SNAPALIGNER_INDEX {
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publishDir = [ enabled: false ]
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}
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withName: SNAPALIGNER_ALIGN {
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ext.args = "-so"
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}
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}
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