mirror of
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43 lines
945 B
YAML
43 lines
945 B
YAML
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name: mlst
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description: Run Torsten Seemann's classic MLST on a genome assembly
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keywords:
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- mlst
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tools:
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- mlst:
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description: Scan contig files against PubMLST typing schemes
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homepage: None
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documentation: None
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tool_dev_url: None
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doi: ""
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licence: ['GPL v2']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: Assembly fasta file
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pattern: "*.{fasta,fa,fna}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- tsv:
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type: file
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description: MLST calls in tsv format
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pattern: "*.{tsv}"
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authors:
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- "@lskatz"
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- "@tseemann"
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