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14 lines
410 B
Text
14 lines
410 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FASTANI } from '../../../modules/fastani/main.nf' addParams( options: [:] )
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workflow test_fastani {
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query = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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reference = file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true)
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FASTANI ( [[ id:'test' ], query], reference )
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}
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