mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-25 20:08:17 +00:00
37 lines
1.2 KiB
Text
37 lines
1.2 KiB
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { FILTLONG } from '../../../modules/filtlong/main.nf' addParams( options: [:] )
|
||
|
|
|
||
|
|
workflow test_filtlong {
|
||
|
|
|
||
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
||
|
|
[],
|
||
|
|
[ file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
|
||
|
|
]
|
||
|
|
|
||
|
|
FILTLONG ( input )
|
||
|
|
}
|
||
|
|
|
||
|
|
workflow test_filtlong_illumina_se {
|
||
|
|
|
||
|
|
input = [ [ id:'test', single_end:true ], // meta map
|
||
|
|
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ],
|
||
|
|
[ file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
|
||
|
|
]
|
||
|
|
|
||
|
|
FILTLONG ( input )
|
||
|
|
}
|
||
|
|
|
||
|
|
workflow test_filtlong_illumina_pe {
|
||
|
|
|
||
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
||
|
|
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
|
||
|
|
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ],
|
||
|
|
[ file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
|
||
|
|
]
|
||
|
|
|
||
|
|
FILTLONG ( input )
|
||
|
|
}
|