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nf-core_modules/tests/modules/gatk4/getpileupsummaries/test.yml

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Getpileupsummaries (#689) * first commit, added template files for new module * created getpileupsummaries script, tests and both yml files * fixed typo in meta.yml * Update modules/gatk4/getpileupsummaries/meta.yml changed gz_tbi to gz.tbi as suggested Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
2021-09-13 15:04:14 +00:00
- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_just_variants
command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_just_variants -c tests/config/nextflow.config
tags:
- gatk4
- gatk4/getpileupsummaries
files:
- path: output/gatk4/test.pileups.table
md5sum: 00f92a8f7282d6129f1aca04e2c7d968
- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites
command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites -c tests/config/nextflow.config
tags:
- gatk4
- gatk4/getpileupsummaries
files:
- path: output/gatk4/test.pileups.table
md5sum: 00f92a8f7282d6129f1aca04e2c7d968
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