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33 lines
887 B
Text
33 lines
887 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GTDBTK_CLASSIFYWF } from '../../../../modules/gtdbtk/classifywf/main.nf' addParams( options: [:] )
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process STUB_GTDBTK_DATABASE {
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output:
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tuple val("gtdbtk_r202_data"), path("database/*"), emit: database
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stub:
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"""
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mkdir database
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touch database/gtdbtk_r202_data
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"""
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}
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workflow test_gtdbtk_classifywf {
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STUB_GTDBTK_DATABASE()
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input = [
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[ id:'test', single_end:false, assembler:'SPADES' ],
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[
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['scaffolds_fasta'], checkIfExists: true)
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]
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]
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GTDBTK_CLASSIFYWF ( input, STUB_GTDBTK_DATABASE.out.database )
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}
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