mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-25 20:08:17 +00:00
19 lines
569 B
Text
19 lines
569 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { KLEBORATE } from '../../../modules/kleborate/main.nf' addParams( options: [:] )
|
||
|
|
|
||
|
|
workflow test_kleborate {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:false ], // meta map
|
||
|
|
[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true),
|
||
|
|
file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true),
|
||
|
|
file(params.test_data['sarscov2']['illumina']['scaffolds_fasta'], checkIfExists: true)
|
||
|
|
]
|
||
|
|
]
|
||
|
|
|
||
|
|
KLEBORATE ( input )
|
||
|
|
}
|