nf-core_modules/tests/software/kraken2/run/test.yml

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- name: kraken2 run single-end
command: nextflow run ./tests/software/kraken2/run -entry test_kraken2_run_single_end -c tests/config/nextflow.config
tags:
- kraken2
- kraken2/run
- kraken2_run_single_end
files:
- path: output/kraken2/test.classified.fastq.gz
should_exist: true
- path: output/kraken2/test.unclassified.fastq.gz
should_exist: true
- path: output/kraken2/test.kraken2.report.txt
md5sum: 4227755fe40478b8d7dc8634b489761e
- name: kraken2 run paired-end
command: nextflow run ./tests/software/kraken2/run -entry test_kraken2_run_paired_end -c tests/config/nextflow.config
tags:
- kraken2
- kraken2/run
- kraken2_run_paired_end
files:
- path: output/kraken2/test.classified_1.fastq.gz
should_exist: true
- path: output/kraken2/test.classified_2.fastq.gz
should_exist: true
- path: output/kraken2/test.unclassified_1.fastq.gz
should_exist: true
- path: output/kraken2/test.unclassified_2.fastq.gz
should_exist: true
- path: output/kraken2/test.kraken2.report.txt
md5sum: 4227755fe40478b8d7dc8634b489761e