nf-core_modules/tests/modules/bcftools/mpileup/test.yml

- name: bcftools mpileup test_bcftools_mpileup
  command: nextflow run tests/modules/bcftools/mpileup -entry test_bcftools_mpileup -c tests/config/nextflow.config
  tags:
    - bcftools/mpileup
    - bcftools
  files:
    - path: output/bcftools/test.bcftools_stats.txt
      md5sum: 2d506e32837a53a01fea0fc90402632a
    - path: output/bcftools/test.vcf.gz.tbi
      md5sum: 11d90b5b35e4adf6b44fc53bec93bed3
    - path: output/bcftools/test.vcf.gz
      md5sum: 2cf273a9fa3784383799b6b24df2f88c
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 14:14:11 -04:00			`- name: bcftools mpileup test_bcftools_mpileup`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 05:10:18 -04:00			`command: nextflow run tests/modules/bcftools/mpileup -entry test_bcftools_mpileup -c tests/config/nextflow.config`
Add tests for bcftools-mpileup 2021-02-23 13:05:57 -05:00			`tags:`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 04:10:52 -04:00			`- bcftools/mpileup`
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 14:14:11 -04:00			`- bcftools`
Add tests for bcftools-mpileup 2021-02-23 13:05:57 -05:00			`files:`
			`- path: output/bcftools/test.bcftools_stats.txt`
Exchange VCF data by sarscov2 data (#261) * added sarscov2 vcf data; adjusted bcftools tests * updated README.md * deleted old VCF files; fixed mergevcfs * fixed tabix 2021-03-09 04:04:08 -05:00			`md5sum: 2d506e32837a53a01fea0fc90402632a`
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 14:14:11 -04:00			`- path: output/bcftools/test.vcf.gz.tbi`
			`md5sum: 11d90b5b35e4adf6b44fc53bec93bed3`
			`- path: output/bcftools/test.vcf.gz`
			`md5sum: 2cf273a9fa3784383799b6b24df2f88c`