2021-10-05 21:52:00 +00:00
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- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_tumor_only
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2021-11-26 07:58:40 +00:00
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command: nextflow run ./tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_tumor_only -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/calculatecontamination/nextflow.config
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2021-10-05 21:52:00 +00:00
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tags:
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- gatk4/calculatecontamination
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- gatk4
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files:
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- path: output/gatk4/test.contamination.table
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2021-11-11 07:58:59 +00:00
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md5sum: 5fdcf1728cf98985ce31c038eb24e05c
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2021-10-05 21:52:00 +00:00
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- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_matched_pair
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2021-11-26 07:58:40 +00:00
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command: nextflow run ./tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_matched_pair -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/calculatecontamination/nextflow.config
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2021-10-05 21:52:00 +00:00
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tags:
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- gatk4/calculatecontamination
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- gatk4
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files:
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- path: output/gatk4/test.contamination.table
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2021-11-11 07:58:59 +00:00
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md5sum: 5fdcf1728cf98985ce31c038eb24e05c
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2021-10-05 21:52:00 +00:00
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- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_segmentation
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2021-11-26 07:58:40 +00:00
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command: nextflow run ./tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_segmentation -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/calculatecontamination/nextflow.config
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2021-10-05 21:52:00 +00:00
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tags:
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- gatk4/calculatecontamination
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- gatk4
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files:
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- path: output/gatk4/test.contamination.table
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2021-11-11 07:58:59 +00:00
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md5sum: 5fdcf1728cf98985ce31c038eb24e05c
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2021-10-05 21:52:00 +00:00
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- path: output/gatk4/test.segmentation.table
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2021-11-11 07:58:59 +00:00
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md5sum: 91f28bfe4727a3256810927fc5eba92f
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