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15 lines
582 B
Text
15 lines
582 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS } from '../../../../modules/metabat2/jgisummarizebamcontigdepths/main.nf' addParams( options: [:] )
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workflow test_metabat2_jgisummarizebamcontigdepths {
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input = [ [ id:'test' ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true) ]
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METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS ( input )
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}
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