nf-core_modules/tests/software/bismark/deduplicate/main.nf

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2021-02-23 17:02:16 +00:00
#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { BISMARK_DEDUPLICATE } from '../../../../software/bismark/deduplicate/main.nf' addParams( options: [:] )
workflow test_bismark_deduplicate {
def input = []
input = [ [ id:'test', single_end:false ], // meta map
[ file("${launchDir}/tests/data/bismark/Ecoli_10K_methylated_R1_bismark_bt2_pe.bam", checkIfExists: true) ] ]
BISMARK_DEDUPLICATE ( input )
}