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16 lines
527 B
Text
16 lines
527 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BLAST_MAKEBLASTDB } from '../../../../software/blast/makeblastdb/main.nf' addParams( options: ['args': '-dbtype nucl'] )
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include { BLAST_BLASTN } from '../../../../software/blast/blastn/main.nf' addParams( options: [:] )
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workflow test_blast_blastn {
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def input = []
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input = [ file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) ]
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BLAST_MAKEBLASTDB (input)
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BLAST_BLASTN ([ [id:'test'], input ], BLAST_MAKEBLASTDB.out.db)
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}
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