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19 lines
765 B
Text
19 lines
765 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { METHYLDACKEL_EXTRACT } from '../../../../software/methyldackel/extract/main.nf' addParams( options: [:] )
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workflow test_methyldackel_extract {
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def input = []
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def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
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def fai = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa.fai", checkIfExists: true)
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input = [ [ id:'test', single_end:false ], // meta map
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file("${launchDir}/tests/data/bam/test.paired_end_methylated.sorted.bam", checkIfExists: true),
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file("${launchDir}/tests/data/bam/test.paired_end_methylated.sorted.bam.bai", checkIfExists: true) ]
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METHYLDACKEL_EXTRACT ( input, fasta, fai )
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}
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