mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 19:48:16 +00:00
18 lines
606 B
Text
18 lines
606 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { SNAPALIGNER_INDEX } from '../../../../modules/snapaligner/index/main.nf'
|
||
|
|
include { SNAPALIGNER_SINGLE } from '../../../../modules/snapaligner/single/main.nf'
|
||
|
|
|
||
|
|
workflow test_snapaligner_single {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:false ], // meta map
|
||
|
|
[file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true)]
|
||
|
|
]
|
||
|
|
|
||
|
|
SNAPALIGNER_INDEX ( file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true),[],[],[])
|
||
|
|
SNAPALIGNER_SINGLE ( input, SNAPALIGNER_INDEX.out.index )
|
||
|
|
}
|