nf-core_modules/tests/software/cutadapt/test.yml

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- name: cutadapt single-end
command: nextflow run ./tests/software/cutadapt -entry test_cutadapt_single_end -c tests/config/nextflow.config
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tags:
- cutadapt
files:
- path: ./output/cutadapt/test.cutadapt.log
- path: ./output/cutadapt/test.trim.fastq.gz
- name: cutadapt paired-end
command: nextflow run ./tests/software/cutadapt -entry test_cutadapt_paired_end -c tests/config/nextflow.config
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tags:
- cutadapt
files:
- path: ./output/cutadapt/test.cutadapt.log
- path: ./output/cutadapt/test_1.trim.fastq.gz
- path: ./output/cutadapt/test_2.trim.fastq.gz