nf-core_modules/tests/software/picard/mergesamfiles/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
2021-02-03 17:31:41 +00:00
include { PICARD_MERGESAMFILES } from '../../../../software/picard/mergesamfiles/main.nf' addParams( options: [:] )
workflow test_picard_mergesamfiles {
input = [ [ id:'test', single_end:false ], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true), ]
]
PICARD_MERGESAMFILES ( input )
}