nf-core_modules/tests/modules/qcat/test.yml

- name: qcat
  command: nextflow run ./tests/modules/qcat -entry test_qcat -c tests/config/nextflow.config
  tags:
    - qcat
  files:
    - path: ./output/qcat/fastq/barcode06.fastq.gz
    - path: ./output/qcat/fastq/barcode12.fastq.gz
    - path: ./output/qcat/fastq/none.fastq.gz
add qcat module (from nanoseq modules) (#469) * add qcat module * remove md5sum(nom-reproducible) 2021-04-30 12:20:56 +00:00			`- name: qcat`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run ./tests/modules/qcat -entry test_qcat -c tests/config/nextflow.config`
add qcat module (from nanoseq modules) (#469) * add qcat module * remove md5sum(nom-reproducible) 2021-04-30 12:20:56 +00:00			`tags:`
			`- qcat`
			`files:`
			`- path: ./output/qcat/fastq/barcode06.fastq.gz`
			`- path: ./output/qcat/fastq/barcode12.fastq.gz`
Fixes for nanoseq modules (#479) * Fix minimap2 index module * Fix minimap2 index tests * Fix graphmap2 index module * Fix graphmap2 module * Fix ECLint * Fix bedtools bamtobed module * Fix tests for bedtools bamtobed module * Add tag for graphmap2 align module * Fix EClint * Fix qcat module * Add md5sum for graphmap2/align module * Remove non-started test data file * Remove md5sum for graphmap2 align 2021-04-30 14:57:43 +00:00			`- path: ./output/qcat/fastq/none.fastq.gz`