nf-core_modules/software/pairtools/restrict/meta.yml

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name: pairtools_restrict
description: Assign restriction fragments to pairs
keywords:
- sort
tools:
- pairtools:
description: CLI tools to process mapped Hi-C data
homepage: http://pairtools.readthedocs.io/
documentation: http://pairtools.readthedocs.io/
tool_dev_url: https://github.com/mirnylab/pairtools
doi: ""
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- pairs:
type: file
description: pairs file
- frag:
type: file
description: |
a tab-separated BED file with the positions of restriction fragments
(chrom, start, end).
Can be generated using cooler digest.
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- restrict:
type: file
description: Filtered pairs file
pattern: "*.{pairs.gz}"
authors:
- "@jianhong"