nf-core_modules/modules/dshbio/exportsegments/meta.yml

42 lines
1.3 KiB
YAML
Raw Normal View History

name: dshbio_exportsegments
description: Export assembly segment sequences in GFA 1.0 format to FASTA format
keywords:
- gfa
- assembly
- segment
tools:
- dshbio:
description: |
Reads, features, variants, assemblies, alignments, genomic range trees, pangenome
graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3
or later.
homepage: https://github.com/heuermh/dishevelled-bio
documentation: https://github.com/heuermh/dishevelled-bio
licence: ['LGPL-3.0-or-later']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- gfa:
type: file
description: Assembly segments in GFA 1.0 format
pattern: "*.{gfa}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: Assembly segment sequences in FASTA format
pattern: "*.{fa}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@heuermh"