nf-core_modules/modules/gatk4/estimatelibrarycomplexity/meta.yml

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name: gatk4_estimatelibrarycomplexity
description: Estimates the numbers of unique molecules in a sequencing library.
keywords:
- gatk4
- gatk4_estimatelibrarycomplexity
- duplication_metrics
- reporting
tools:
- gatk4:
description: Genome Analysis Toolkit (GATK4)
homepage: https://gatk.broadinstitute.org/hc/en-us
documentation: https://gatk.broadinstitute.org/hc/en-us
tool_dev_url: https://github.com/broadinstitute/gatk
doi: "10.1158/1538-7445.AM2017-3590"
licence: ['Apache-2.0']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- cram:
type: file
description: BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
- fasta:
type: file
description: The reference fasta file
pattern: "*.fasta"
- fai:
type: file
description: Index of reference fasta file
pattern: "fasta.fai"
- dict:
type: file
description: GATK sequence dictionary
pattern: "*.dict"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- metrics:
type: file
description: File containing metrics on the input files
pattern: "*.{metrics}"
authors:
- "@FriederikeHanssen"