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nf-core_modules/tests/modules/gunc/downloaddb/test.yml

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New module: `gunc run` (+ `gunc downloaddb`) (#880) * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Add GUNC download_db and run commands * Bump with version without zgrep * Apply suggestions from code review Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * Harshil formatting * Apply suggestions from code review Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
2021-11-03 16:01:23 +00:00
- name: gunc downloaddb
command: nextflow run ./tests/modules/gunc/downloaddb -entry test_gunc_downloaddb -c tests/config/nextflow.config
tags:
- gunc
- gunc/downloaddb
files:
- path: output/gunc/gunc_db_progenomes2.1.dmnd
md5sum: 447c9330056b02f29f30fe81fe4af4eb
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