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18 lines
749 B
Text
18 lines
749 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HOMER_MAKETAGDIRECTORY } from '../../../../modules/homer/maketagdirectory/main.nf' addParams( options: [args: '-format bed'] )
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include { HOMER_MAKEUCSCFILE } from '../../../../modules/homer/makeucscfile/main.nf' addParams( options: [:] )
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workflow test_homer_makeucscfile {
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input = [[id:'test'],
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[file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true),
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file(params.test_data['sarscov2']['genome']['test2_bed'], checkIfExists: true)]]
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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HOMER_MAKETAGDIRECTORY (input, fasta)
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HOMER_MAKEUCSCFILE ( HOMER_MAKETAGDIRECTORY.out.tagdir )
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}
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