2021-02-09 15:58:36 +00:00
|
|
|
name: blast_blastn
|
|
|
|
|
description: Queries a BLAST DNA database
|
|
|
|
|
keywords:
|
|
|
|
|
- fasta
|
|
|
|
|
- blast
|
|
|
|
|
- blastn
|
|
|
|
|
- DNA sequence
|
|
|
|
|
tools:
|
|
|
|
|
- blast:
|
|
|
|
|
description: |
|
|
|
|
|
BLAST finds regions of similarity between biological sequences.
|
|
|
|
|
homepage: https://blast.ncbi.nlm.nih.gov/Blast.cgi
|
|
|
|
|
documentation: https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=Blastdocs
|
|
|
|
|
doi: 10.1016/S0022-2836(05)80360-2
|
2021-10-22 22:39:54 +00:00
|
|
|
licence: ['US-Government-Work']
|
2021-02-09 15:58:36 +00:00
|
|
|
input:
|
|
|
|
|
- meta:
|
|
|
|
|
type: map
|
|
|
|
|
description: |
|
|
|
|
|
Groovy Map containing sample information
|
|
|
|
|
e.g. [ id:'test', single_end:false ]
|
|
|
|
|
- fasta:
|
|
|
|
|
type: file
|
|
|
|
|
description: Input fasta file containing queries sequences
|
|
|
|
|
pattern: "*.{fa,fasta}"
|
|
|
|
|
- db:
|
|
|
|
|
type: directory
|
|
|
|
|
description: Directory containing blast database
|
|
|
|
|
pattern: "*"
|
|
|
|
|
output:
|
|
|
|
|
- txt:
|
|
|
|
|
type: file
|
|
|
|
|
description: File containing blastn hits
|
|
|
|
|
pattern: "*.{blastn.txt}"
|
2021-10-03 07:20:26 +00:00
|
|
|
- versions:
|
2021-02-09 15:58:36 +00:00
|
|
|
type: file
|
2021-10-03 07:20:26 +00:00
|
|
|
description: File containing software versions
|
2021-09-27 08:41:24 +00:00
|
|
|
pattern: "versions.yml"
|
2021-02-09 15:58:36 +00:00
|
|
|
authors:
|
|
|
|
|
- "@joseespinosa"
|
|
|
|
|
- "@drpatelh"
|
