nf-core_modules/.github/workflows/fastp.yml

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2021-02-01 13:02:06 +00:00
name: fastp
on:
push:
paths:
- software/fastp/**
- .github/workflows/fastp.yml
- tests
pull_request:
paths:
- software/fastp/**
- .github/workflows/fastp.yml
- tests
jobs:
ci_test:
runs-on: ubuntu-latest
strategy:
matrix:
nxf_version: [20.11.0-edge]
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
env:
NXF_VER: ${{ matrix.nxf_version }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag fastp --symlink --wt 2