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nf-core_modules/tests/software/shovill/test.yml

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Update shovill module (#337) * add shovill module * removed deprecated shovill module * fix line ending in functions.nf * fix yaml indentation * reduce spades memory usage * update md5sums * remove non reproducible md5sum * Update test.yml Remove last non-reproducible md5sum. * purely cosmetic order change * proper process label, improve output readability Co-authored-by: Florian Wuennemann <flowuenne@gmail.com>
2021-03-24 04:57:41 +00:00
- name: shovill with spades
command: nextflow run ./tests/software/shovill -entry test_shovill -c tests/config/nextflow.config
tags:
- shovill
files:
- path: output/shovill/contigs.gfa
md5sum: 277af5d8ae8a0d2432db59a316226828
- path: output/shovill/spades.fasta
md5sum: 2506fc2af3a24397a3c5d3fbda0861fb
# MD5sum not reproducible (timestamp)
- path: output/shovill/contigs.fa
- path: output/shovill/shovill.corrections
- path: output/shovill/shovill.log
- name: shovill with megahit
command: nextflow run ./tests/software/shovill -entry test_shovill_megahit -c tests/config/nextflow.config
tags:
- shovill
files:
- path: output/shovill/shovill.corrections
md5sum: d41d8cd98f00b204e9800998ecf8427e
# MD5sum not reproducible (timestamp, contig order)
- path: output/shovill/contigs.fa
- path: output/shovill/contigs.fastg
- path: output/shovill/megahit.fasta
- path: output/shovill/shovill.log
remove deprecated test tags (#440) * remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
2021-04-13 17:03:09 +00:00
Update shovill module (#337) * add shovill module * removed deprecated shovill module * fix line ending in functions.nf * fix yaml indentation * reduce spades memory usage * update md5sums * remove non reproducible md5sum * Update test.yml Remove last non-reproducible md5sum. * purely cosmetic order change * proper process label, improve output readability Co-authored-by: Florian Wuennemann <flowuenne@gmail.com>
2021-03-24 04:57:41 +00:00
- name: shovill with skesa
command: nextflow run ./tests/software/shovill -entry test_shovill_skesa -c tests/config/nextflow.config
tags:
- shovill
files:
- path: output/shovill/shovill.corrections
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: output/shovill/skesa.fasta
remove deprecated test tags (#440) * remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
2021-04-13 17:03:09 +00:00
md5sum: 8157837dbe8315922f588dafa7af5ef8
Update shovill module (#337) * add shovill module * removed deprecated shovill module * fix line ending in functions.nf * fix yaml indentation * reduce spades memory usage * update md5sums * remove non reproducible md5sum * Update test.yml Remove last non-reproducible md5sum. * purely cosmetic order change * proper process label, improve output readability Co-authored-by: Florian Wuennemann <flowuenne@gmail.com>
2021-03-24 04:57:41 +00:00
# MD5sum not reproducible (timestamp)
- path: output/shovill/contigs.fa
- path: output/shovill/shovill.log
- name: shovill with velvet
command: nextflow run ./tests/software/shovill -entry test_shovill_velvet -c tests/config/nextflow.config
tags:
- shovill
files:
# MD5sum not reproducible (timestamp, contig order)
- path: output/shovill/contigs.fa
- path: output/shovill/contigs.LastGraph
- path: output/shovill/shovill.corrections
- path: output/shovill/shovill.log
- path: output/shovill/velvet.fasta
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