nf-core_modules/tests/modules/rsem/preparereference/main.nf

#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { RSEM_PREPAREREFERENCE }   from '../../../../modules/rsem/preparereference/main.nf'   addParams(options: [:])

workflow test_rsem_preparereference {

    fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
    gtf = file(params.test_data['homo_sapiens']['genome']['genome_gtf'], checkIfExists: true)

    RSEM_PREPAREREFERENCE ( fasta, gtf )
}
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 11:09:48 +00:00			`#!/usr/bin/env nextflow`

			`nextflow.enable.dsl = 2`

Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`include { RSEM_PREPAREREFERENCE } from '../../../../modules/rsem/preparereference/main.nf' addParams(options: [:])`
Fix rsem (#555) * bump bcftools filter * fix bcftools * rsem/preparereference * added calculateexpression * meta.yml and pytest_software * paired end * add test.yml 2021-07-02 11:09:48 +00:00
			`workflow test_rsem_preparereference {`

			`fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)`
			`gtf = file(params.test_data['homo_sapiens']['genome']['genome_gtf'], checkIfExists: true)`

			`RSEM_PREPAREREFERENCE ( fasta, gtf )`
			`}`