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20 lines
694 B
Text
20 lines
694 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { ATLAS_PMD } from '../../../../modules/atlas/pmd/main.nf'
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workflow test_atlas_pmd {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true),
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[]
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]
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fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
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fai = file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)
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ATLAS_PMD ( input, fasta, fai )
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}
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