nf-core_modules/tests/modules/tabix/bgzip/main.nf

#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { TABIX_BGZIP } from '../../../../modules/tabix/bgzip/main.nf'
include { TABIX_BGZIP as TABIX_BGZIP_WITH_GZI } from '../../../../modules/tabix/bgzip/main.nf'

workflow test_tabix_bgzip_compress {
    input = [ [ id:'test' ], // meta map
              [ file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true) ]
            ]

    TABIX_BGZIP ( input )
}

workflow test_tabix_bgzip_compress_gzi {
    input = [ [ id:'test' ], // meta map
              [ file(params.test_data['sarscov2']['illumina']['test_vcf'], checkIfExists: true) ]
            ]

    TABIX_BGZIP_WITH_GZI ( input )
}

workflow test_tabix_bgzip_decompress {
    input = [ [ id:'test' ], // meta map
              [ file(params.test_data['sarscov2']['genome']['test_bed_gz'], checkIfExists: true) ]
            ]

    TABIX_BGZIP ( input )
}