mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
20 lines
537 B
Text
20 lines
537 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { DEEPARG_DOWNLOADDATA } from '../../../../modules/deeparg/downloaddata/main.nf'
|
||
|
|
include { DEEPARG_PREDICT } from '../../../../modules/deeparg/predict/main.nf'
|
||
|
|
|
||
|
|
workflow test_deeparg_predict {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:false ], // meta map
|
||
|
|
file(params.test_data['bacteroides_fragilis']['genome']['genome_fna_gz'], checkIfExists: true),
|
||
|
|
'LS'
|
||
|
|
]
|
||
|
|
|
||
|
|
DEEPARG_DOWNLOADDATA()
|
||
|
|
DEEPARG_PREDICT ( input, DEEPARG_DOWNLOADDATA.out.db )
|
||
|
|
|
||
|
|
}
|