mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 14:13:09 +00:00
98 lines
5 KiB
YAML
98 lines
5 KiB
YAML
|
- name: deepbgc pipeline test_deepbgc_pipeline_gbk
|
||
|
|
command: nextflow run ./tests/modules/deepbgc/pipeline -entry test_deepbgc_pipeline_gbk -c ./tests/config/nextflow.config -c ./tests/modules/deepbgc/pipeline/nextflow.config
|
||
|
|
tags:
|
||
|
|
- deepbgc/pipeline
|
||
|
|
- deepbgc
|
||
|
|
files:
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/classifier/product_activity.pkl
|
||
|
|
md5sum: 90f0c010460e9df882cb057664a49f30
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/classifier/product_class.pkl
|
||
|
|
md5sum: f78a2eda240403d2f40643d42202f3ac
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/detector/clusterfinder_geneborder.pkl
|
||
|
|
md5sum: ca4be7031ae9f70780f17c616a4fa5b5
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/detector/clusterfinder_original.pkl
|
||
|
|
md5sum: 2ca2429bb9bc99a401d1093c376b37aa
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/detector/clusterfinder_retrained.pkl
|
||
|
|
md5sum: 65679a3b61c562ff4b84bdb574bb6d93
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/detector/deepbgc.pkl
|
||
|
|
md5sum: 7e9218be79ba45bc9adb23bed3845dc1
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.clans.tsv
|
||
|
|
md5sum: a0a4590ffb2b33b83ef2b28f6ead886b
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.hmm
|
||
|
|
md5sum: 79a3328e4c95b13949a4489b19959fc5
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.hmm.h3f
|
||
|
|
md5sum: cbca323cf8dd4e5e7c109114ec444162
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.hmm.h3i
|
||
|
|
md5sum: 5242332a3f6a60cd1ab634cd9331afd6
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.hmm.h3m
|
||
|
|
md5sum: 1fe946fa2b3bcde1d4b2bad732bce612
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.hmm.h3p
|
||
|
|
md5sum: 27b98a1ded123b6a1ef72db01927017c
|
||
|
|
- path: output/deepbgc/test_gbk/LOG.txt
|
||
|
|
contains: ["Saved DeepBGC result to:"]
|
||
|
|
- path: output/deepbgc/test_gbk/README.txt
|
||
|
|
- path: output/deepbgc/test_gbk/test_gbk.antismash.json
|
||
|
|
md5sum: 7dba3996cf38756b05e7612de8433c23
|
||
|
|
- path: output/deepbgc/test_gbk/test_gbk.bgc.gbk
|
||
|
|
- path: output/deepbgc/test_gbk/test_gbk.full.gbk
|
||
|
|
- path: output/gunzip/test1.contigs.fa
|
||
|
|
md5sum: 80c4d78f2810f6d9e90fa6da9bb9c4f9
|
||
|
|
- path: output/prodigal/test_gbk.faa
|
||
|
|
md5sum: b140ca303ff9ee32e615bfcc4b05038c
|
||
|
|
- path: output/prodigal/test_gbk.fna
|
||
|
|
md5sum: 28232dd696754fb95308874c9528296f
|
||
|
|
- path: output/prodigal/test_gbk.gbk
|
||
|
|
md5sum: b5c309b0296e7cdc21d1e71f33400f20
|
||
|
|
- path: output/prodigal/test_gbk_all.txt
|
||
|
|
md5sum: 8fe56fcf4d9e839e83be7523cd3efa02
|
||
|
|
|
||
|
|
- name: deepbgc pipeline test_deepbgc_pipeline_fa
|
||
|
|
command: nextflow run ./tests/modules/deepbgc/pipeline -entry test_deepbgc_pipeline_fa -c ./tests/config/nextflow.config -c ./tests/modules/deepbgc/pipeline/nextflow.config
|
||
|
|
tags:
|
||
|
|
- deepbgc/pipeline
|
||
|
|
- deepbgc
|
||
|
|
files:
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/classifier/product_activity.pkl
|
||
|
|
md5sum: 90f0c010460e9df882cb057664a49f30
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/classifier/product_class.pkl
|
||
|
|
md5sum: f78a2eda240403d2f40643d42202f3ac
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/detector/clusterfinder_geneborder.pkl
|
||
|
|
md5sum: ca4be7031ae9f70780f17c616a4fa5b5
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/detector/clusterfinder_original.pkl
|
||
|
|
md5sum: 2ca2429bb9bc99a401d1093c376b37aa
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/detector/clusterfinder_retrained.pkl
|
||
|
|
md5sum: 65679a3b61c562ff4b84bdb574bb6d93
|
||
|
|
- path: output/deepbgc/deepbgc_db/0.1.0/detector/deepbgc.pkl
|
||
|
|
md5sum: 7e9218be79ba45bc9adb23bed3845dc1
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.clans.tsv
|
||
|
|
md5sum: a0a4590ffb2b33b83ef2b28f6ead886b
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.hmm
|
||
|
|
md5sum: 79a3328e4c95b13949a4489b19959fc5
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.hmm.h3f
|
||
|
|
md5sum: cbca323cf8dd4e5e7c109114ec444162
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.hmm.h3i
|
||
|
|
md5sum: 5242332a3f6a60cd1ab634cd9331afd6
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.hmm.h3m
|
||
|
|
md5sum: 1fe946fa2b3bcde1d4b2bad732bce612
|
||
|
|
- path: output/deepbgc/deepbgc_db/common/Pfam-A.31.0.hmm.h3p
|
||
|
|
md5sum: 27b98a1ded123b6a1ef72db01927017c
|
||
|
|
- path: output/deepbgc/test1.contigs/LOG.txt
|
||
|
|
contains: ["Saved DeepBGC result to:"]
|
||
|
|
- path: output/deepbgc/test1.contigs/README.txt
|
||
|
|
- path: output/deepbgc/test1.contigs/evaluation/test1.contigs.bgc.png
|
||
|
|
md5sum: f4a0fc6cd260e2d7ad16f7a1fa103f96
|
||
|
|
- path: output/deepbgc/test1.contigs/evaluation/test1.contigs.score.png
|
||
|
|
md5sum: 572e8882031f667580d8c8e13c2cbb91
|
||
|
|
- path: output/deepbgc/test1.contigs/test1.contigs.antismash.json
|
||
|
|
contains: ['"name": "DeepBGC"']
|
||
|
|
- path: output/deepbgc/test1.contigs/test1.contigs.bgc.gbk
|
||
|
|
md5sum: 7fc70dd034903622dae273bf71b402f2
|
||
|
|
- path: output/deepbgc/test1.contigs/test1.contigs.bgc.tsv
|
||
|
|
contains: ["sequence_id"]
|
||
|
|
- path: output/deepbgc/test1.contigs/test1.contigs.full.gbk
|
||
|
|
contains: ["LOCUS"]
|
||
|
|
- path: output/deepbgc/test1.contigs/test1.contigs.pfam.tsv
|
||
|
|
md5sum: 1179eb4e6df0c83aaeec18d7d34e7524
|
||
|
|
- path: output/gunzip/test1.contigs.fa
|
||
|
|
md5sum: 80c4d78f2810f6d9e90fa6da9bb9c4f9
|