nf-core_modules/tests/modules/hmmcopy/generatemap/test.yml

- name: hmmcopy generatemap test_hmmcopy_generatemap
  command: nextflow run tests/modules/hmmcopy/generatemap -entry test_hmmcopy_generatemap -c tests/config/nextflow.config
  tags:
    - hmmcopy
    - hmmcopy/generatemap
  files:
    - path: output/hmmcopy/genome.fasta.map.bw
      md5sum: 7ad68224a1e40287978284c387e8eb70
    - path: output/hmmcopy/versions.yml
      md5sum: f950580f94d8a2d88332c477972cb9f0
New subtool: hmmcopy/generatemap (#1168) * Initial structure * Working with local singularity image * Working generateMap.pl script * Remote not working bioconda * Working generateMap with biocontainer * Lint changes * Updated hmmcopy container version to be consistent * Fix failing test * Remove path to perl * No hardpath to script * Update main.nf Moved version outside of process, add support for zipped fasta file * Revert to not allowing gzip via pipe, as perl script can't cope Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> 2021-12-15 15:57:42 +00:00			`- name: hmmcopy generatemap test_hmmcopy_generatemap`
			`command: nextflow run tests/modules/hmmcopy/generatemap -entry test_hmmcopy_generatemap -c tests/config/nextflow.config`
			`tags:`
			`- hmmcopy`
			`- hmmcopy/generatemap`
			`files:`
			`- path: output/hmmcopy/genome.fasta.map.bw`
			`md5sum: 7ad68224a1e40287978284c387e8eb70`
			`- path: output/hmmcopy/versions.yml`
			`md5sum: f950580f94d8a2d88332c477972cb9f0`