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https://github.com/MillironX/nf-core_modules.git
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23 lines
1,010 B
Text
23 lines
1,010 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { UNTAR } from '../../../../modules/untar/main.nf'
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include { METAPHLAN3 } from '../../../../modules/metaphlan3/metaphlan3/main.nf'
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include { METAPHLAN3_MERGEMETAPHLANTABLES } from '../../../../modules/metaphlan3/mergemetaphlantables/main.nf'
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workflow test_metaphlan3_mergemetaphlantables {
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input = Channel.of(
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[[ id:'test', single_end:true ], [ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]],
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[[ id:'test2', single_end:true ], [ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]]
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)
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db = [ [], file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/metaphlan_database.tar.gz', checkIfExists: true) ]
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UNTAR ( db )
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METAPHLAN3 ( input, UNTAR.out.untar.map{ it[1] } )
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METAPHLAN3_MERGEMETAPHLANTABLES ( METAPHLAN3.out.profile.map{it[1]}.collect() )
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}
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