mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
47 lines
1.2 KiB
YAML
47 lines
1.2 KiB
YAML
|
name: gfaffix
|
||
|
|
description: Collapse walk-preserving shared affixes in variation graphs in GFA format
|
||
|
|
keywords:
|
||
|
|
- gfa
|
||
|
|
- graph
|
||
|
|
- pangenome
|
||
|
|
- variation graph
|
||
|
|
tools:
|
||
|
|
- gfaffix:
|
||
|
|
description: |
|
||
|
|
GFAffix identifies walk-preserving shared affixes in variation graphs and
|
||
|
|
collapses them into a non-redundant graph structure.
|
||
|
|
homepage: https://github.com/marschall-lab/GFAffix
|
||
|
|
documentation: https://github.com/marschall-lab/GFAffix
|
||
|
|
licence: ["MIT"]
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- gfa:
|
||
|
|
type: file
|
||
|
|
description: Variation graph in GFA format
|
||
|
|
pattern: "*.{gfa}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- gfa:
|
||
|
|
type: file
|
||
|
|
description: Non-redundant variation graph in GFA 1.0 format
|
||
|
|
pattern: "*.{gfa}"
|
||
|
|
- affixes:
|
||
|
|
type: file
|
||
|
|
description: Shared affixes in tab-separated values (TSV) text format
|
||
|
|
pattern: "*.{txt}"
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
authors:
|
||
|
|
- "@heuermh"
|