nf-core_modules/modules/dragmap/hashtable/meta.yml

name: dragmap_hashtable
description: Create DRAGEN hashtable for reference genome
keywords:
  - index
  - fasta
  - genome
  - reference
tools:
  - dragmap:
      description: Dragmap is the Dragen mapper/aligner Open Source Software.
      homepage: https://github.com/Illumina/dragmap
      documentation: https://github.com/Illumina/dragmap
      tool_dev_url: https://github.com/Illumina/dragmap#basic-command-line-usage
      doi: ""
      licence: ["GPL v3"]
input:
  - fasta:
      type: file
      description: Input genome fasta file
output:
  - hashmap:
      type: file
      description: DRAGMAP hash table
      pattern: "*.{cmp,.bin,.txt}"
  - versions:
      type: file
      description: File containing software versions
      pattern: "versions.yml"
authors:
  - "@Emiller88"
Dragmap (#1108) * feat(dragmap): Add initial hastable module * feat(dragmap): Add initial align module * test(dragmap): Remove md5sum Forgot sam files have a header. Might pipe this through samtools. * build(dragmap): Add mulled container * chore(dragmap): Update prefix * feat(dragmap): Output a bam file * feat(dragmap): Add log files * Update modules/dragmap/align/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> 2021-12-06 08:56:41 +00:00			`name: dragmap_hashtable`
			`description: Create DRAGEN hashtable for reference genome`
			`keywords:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- index`
			`- fasta`
			`- genome`
			`- reference`
Dragmap (#1108) * feat(dragmap): Add initial hastable module * feat(dragmap): Add initial align module * test(dragmap): Remove md5sum Forgot sam files have a header. Might pipe this through samtools. * build(dragmap): Add mulled container * chore(dragmap): Update prefix * feat(dragmap): Output a bam file * feat(dragmap): Add log files * Update modules/dragmap/align/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> 2021-12-06 08:56:41 +00:00			`tools:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- dragmap:`
			`description: Dragmap is the Dragen mapper/aligner Open Source Software.`
			`homepage: https://github.com/Illumina/dragmap`
			`documentation: https://github.com/Illumina/dragmap`
			`tool_dev_url: https://github.com/Illumina/dragmap#basic-command-line-usage`
			`doi: ""`
			`licence: ["GPL v3"]`
Dragmap (#1108) * feat(dragmap): Add initial hastable module * feat(dragmap): Add initial align module * test(dragmap): Remove md5sum Forgot sam files have a header. Might pipe this through samtools. * build(dragmap): Add mulled container * chore(dragmap): Update prefix * feat(dragmap): Output a bam file * feat(dragmap): Add log files * Update modules/dragmap/align/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> 2021-12-06 08:56:41 +00:00			`input:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- fasta:`
			`type: file`
			`description: Input genome fasta file`
Dragmap (#1108) * feat(dragmap): Add initial hastable module * feat(dragmap): Add initial align module * test(dragmap): Remove md5sum Forgot sam files have a header. Might pipe this through samtools. * build(dragmap): Add mulled container * chore(dragmap): Update prefix * feat(dragmap): Output a bam file * feat(dragmap): Add log files * Update modules/dragmap/align/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> 2021-12-06 08:56:41 +00:00			`output:`
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2022-02-15 11:15:27 +00:00			`- hashmap:`
			`type: file`
			`description: DRAGMAP hash table`
			`pattern: "*.{cmp,.bin,.txt}"`
			`- versions:`
			`type: file`
			`description: File containing software versions`
			`pattern: "versions.yml"`
Dragmap (#1108) * feat(dragmap): Add initial hastable module * feat(dragmap): Add initial align module * test(dragmap): Remove md5sum Forgot sam files have a header. Might pipe this through samtools. * build(dragmap): Add mulled container * chore(dragmap): Update prefix * feat(dragmap): Output a bam file * feat(dragmap): Add log files * Update modules/dragmap/align/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> 2021-12-06 08:56:41 +00:00			`authors:`
			`- "@Emiller88"`