mirror of
https://github.com/MillironX/nf-core_modules.git
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69 lines
2 KiB
YAML
69 lines
2 KiB
YAML
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name: jupyternotebook
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description: |
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Render jupyter (or jupytext) notebooks to HTML reports. Supports parametrization
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through papermill.
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keywords:
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- Python
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- Jupyter
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- jupytext
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- papermill
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- notebook
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- reports
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tools:
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- jupytext:
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description: Jupyter notebooks as plain text scripts or markdown documents
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homepage: https://github.com/mwouts/jupytext/
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documentation: https://jupyter.org/documentation
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tool_dev_url: https://github.com/mwouts/jupytext/
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licence: "MIT"
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- papermill:
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description: Parameterize, execute, and analyze notebooks
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homepage: https://github.com/nteract/papermill
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documentation: http://papermill.readthedocs.io/en/latest/
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tool_dev_url: https://github.com/nteract/papermill
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licence: "BSD 3-clause"
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- nbconvert:
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description: Parameterize, execute, and analyze notebooks
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homepage: https://nbconvert.readthedocs.io/en/latest/
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documentation: https://nbconvert.readthedocs.io/en/latest/
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tool_dev_url: https://github.com/jupyter/nbconvert
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licence: "BSD 3-clause"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- notebook:
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type: file
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description: Jupyter notebook or jupytext representation thereof
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pattern: "*.{ipynb,py,md,Rmd,myst}"
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- parameters:
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type: map
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description: |
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Groovy map with notebook parameters which will be passed
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to papermill in order to create parametrized reports.
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- input_files:
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type: path
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description: One or multiple files serving as input data for the notebook.
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pattern: "*"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- report:
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type: file
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description: HTML report generated from Jupyter notebook
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pattern: "*.html"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@grst"
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