mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 00:02:04 +00:00
31 lines
924 B
YAML
31 lines
924 B
YAML
|
name: bedtools genomecov
|
||
|
|
description: Returns feature coverage for a given genome in different formats
|
||
|
|
keywords:
|
||
|
|
- complement
|
||
|
|
tools:
|
||
|
|
- bedtools:
|
||
|
|
description: |
|
||
|
|
Bedtools is a software package that provides with a toolset to perform genome arithmetic operations.
|
||
|
|
homepage: https://bedtools.readthedocs.io/en/latest/index.html
|
||
|
|
documentation: https://bedtools.readthedocs.io/en/latest/index.html
|
||
|
|
doi: 10.093/bioinformatics/btq033
|
||
|
|
input:
|
||
|
|
-
|
||
|
|
- input_file:
|
||
|
|
type: file
|
||
|
|
description: Input genomic coordinates file
|
||
|
|
pattern: "*.{bam}"
|
||
|
|
- fasta_sizes:
|
||
|
|
type: file
|
||
|
|
description: Genome chromosome sizes
|
||
|
|
pattern: "*.{txt,sizes}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
-
|
||
|
|
- index:
|
||
|
|
type: stdout,file
|
||
|
|
description:
|
||
|
|
pattern: "stdout,*.{bed,bedGraph}"
|
||
|
|
authors:
|
||
|
|
- "@JoseEspinosa"
|