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42 lines
1.2 KiB
YAML
42 lines
1.2 KiB
YAML
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name: "hmmer_eslreformat"
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description: reformats sequence files, see HMMER documentation for details. The module requires that the format is specified in ext.args in a config file, and that this comes last. See the tools help for possible values.
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keywords:
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- sort
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tools:
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- "hmmer":
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description: "Biosequence analysis using profile hidden Markov models"
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homepage: http://hmmer.org/
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documentation: http://hmmer.org/documentation.html
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tool_dev_url: None
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doi: "http://dx.doi.org/10.1371/journal.pcbi.1002195"
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licence: ["BSD-3-Clause"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- seqfile:
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type: file
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description: Sequences, aligned or not, in any supported format
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pattern: "*"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- seqreformated:
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type: file
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description: Reformated sequence file
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pattern: "*.sequences.gz"
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authors:
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- "@erikrikarddaniel"
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