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nf-core_modules/tests/software/allelecounter/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { ALLELECOUNTER } from '../../../software/allelecounter/main.nf' addParams( options: [:] )
workflow test_allelecounter {
input = [ [ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true)
]
positions = [ file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true) ]
ALLELECOUNTER ( input, positions )
}