nf-core_modules/tests/software/tiddit/sv/test.yml

- name: tiddit sv
  command: nextflow run ./tests/software/tiddit/sv -entry test_tiddit_sv -c tests/config/nextflow.config
  tags:
    - tiddit
    - tiddit/sv
  files:
    - path: output/tiddit/test.ploidy.tab
      md5sum: 45e050b0e204f0a5a3a99627cc440eaa
    - path: output/tiddit/test.signals.tab
      md5sum: 25408a43dbdd01c08e33a6d670f2bb84
    - path: output/tiddit/test.vcf
      should_exist: true

- name: tiddit sv no ref
  command: nextflow run ./tests/software/tiddit/sv -entry test_tiddit_sv_no_ref -c tests/config/nextflow.config
  tags:
    - tiddit
    - tiddit/sv
  files:
    - path: output/tiddit/test.ploidy.tab
      md5sum: 45e050b0e204f0a5a3a99627cc440eaa
    - path: output/tiddit/test.signals.tab
      md5sum: 25408a43dbdd01c08e33a6d670f2bb84
    - path: output/tiddit/test.vcf
      should_exist: true
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00			`- name: tiddit sv`
			`command: nextflow run ./tests/software/tiddit/sv -entry test_tiddit_sv -c tests/config/nextflow.config`
			`tags:`
			`- tiddit`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- tiddit/sv`
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00			`files:`
			`- path: output/tiddit/test.ploidy.tab`
fix: update tiddit_sv tests (#272) 2021-03-15 14:02:20 +00:00			`md5sum: 45e050b0e204f0a5a3a99627cc440eaa`
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00			`- path: output/tiddit/test.signals.tab`
fix: update tiddit_sv tests (#272) 2021-03-15 14:02:20 +00:00			`md5sum: 25408a43dbdd01c08e33a6d670f2bb84`
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00			`- path: output/tiddit/test.vcf`
Check only for vcf file to exists (includes cmd) 2021-02-26 06:14:29 +00:00			`should_exist: true`
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00
			`- name: tiddit sv no ref`
			`command: nextflow run ./tests/software/tiddit/sv -entry test_tiddit_sv_no_ref -c tests/config/nextflow.config`
			`tags:`
			`- tiddit`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- tiddit/sv`
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00			`files:`
			`- path: output/tiddit/test.ploidy.tab`
fix: update tiddit_sv tests (#272) 2021-03-15 14:02:20 +00:00			`md5sum: 45e050b0e204f0a5a3a99627cc440eaa`
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00			`- path: output/tiddit/test.signals.tab`
fix: update tiddit_sv tests (#272) 2021-03-15 14:02:20 +00:00			`md5sum: 25408a43dbdd01c08e33a6d670f2bb84`
feat: add tiddit_sv module 2021-02-24 14:59:10 +00:00			`- path: output/tiddit/test.vcf`
Check only for vcf file to exists (includes cmd) 2021-02-26 06:14:29 +00:00			`should_exist: true`