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https://github.com/MillironX/nf-core_modules.git
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43 lines
1.1 KiB
YAML
43 lines
1.1 KiB
YAML
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name: hisat2_build
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description: Builds HISAT2 index for reference genome
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keywords:
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- build
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- index
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- fasta
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- genome
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- reference
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tools:
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- hisat2:
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description: HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.
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homepage: https://daehwankimlab.github.io/hisat2/
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documentation: https://daehwankimlab.github.io/hisat2/manual/
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doi: "10.1038/s41587-019-0201-4"
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licence: ['MIT']
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input:
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- fasta:
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type: file
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description: Reference fasta file
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pattern: "*.{fa,fasta,fna}"
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- gtf:
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type: file
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description: Reference gtf annotation file
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pattern: "*.{gtf}"
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- splicesites:
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type: file
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description: Splices sites in gtf file
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pattern: "*.{txt}"
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- index:
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type: file
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description: HISAT2 genome index file
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pattern: "*.ht2"
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authors:
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- "@ntoda03"
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