nf-core_modules/software/bcftools/consensus/meta.yml

49 lines
1.3 KiB
YAML
Raw Normal View History

2021-01-31 21:23:26 +00:00
name: bcftools_consensus
description: Compresses VCF files
keywords:
- variant calling
- consensus
- VCF
tools:
- consensus:
2021-02-01 08:28:51 +00:00
description: |
Create consensus sequence by applying VCF variants to a reference fasta file.
homepage: http://samtools.github.io/bcftools/bcftools.html
documentation: http://www.htslib.org/doc/bcftools.html
doi: 10.1093/bioinformatics/btp352
2021-01-31 21:23:26 +00:00
input:
- meta:
2021-02-01 08:28:51 +00:00
type: map
description: |
2021-02-02 08:57:55 +00:00
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
2021-01-31 21:23:26 +00:00
- vcf:
2021-02-01 08:28:51 +00:00
type: file
description: VCF file
pattern: "*.{vcf}"
2021-01-31 21:23:26 +00:00
- tbi:
2021-02-01 08:28:51 +00:00
type: file
description: tabix index file
pattern: "*.{tbi}"
2021-02-02 08:57:55 +00:00
- fasta:
2021-01-31 21:23:26 +00:00
type: file
description: FASTA reference file
pattern: "*.{fasta,fa}"
output:
2021-02-01 08:28:51 +00:00
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
2021-01-31 21:23:26 +00:00
- fasta:
type: file
description: FASTA reference consensus file
pattern: "*.{fasta,fa}"
- version:
2021-02-01 08:28:51 +00:00
type: file
description: File containing software version
pattern: "*.{version.txt}"
2021-01-31 21:23:26 +00:00
authors:
- "@joseespinosa"
- "@drpatelh"