mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
35 lines
925 B
YAML
35 lines
925 B
YAML
|
name: seqtk_subseq
|
||
|
|
description: Select only sequences that match the filtering condition
|
||
|
|
keywords:
|
||
|
|
- filtering,selection
|
||
|
|
tools:
|
||
|
|
- seqtk:
|
||
|
|
description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format
|
||
|
|
homepage: https://github.com/lh3/seqtk
|
||
|
|
documentation: https://docs.csc.fi/apps/seqtk/
|
||
|
|
tool_dev_url: https://github.com/lh3/seqtk
|
||
|
|
licence: ['MIT']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- sequences:
|
||
|
|
type: file
|
||
|
|
description: FASTQ/FASTA file
|
||
|
|
pattern: "*.{fq,fq.gz,fa,fa.gz}"
|
||
|
|
- filter_list:
|
||
|
|
type: file
|
||
|
|
description: BED file or a text file with a list of sequence names
|
||
|
|
pattern: "*.{bed,lst}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
- sequences:
|
||
|
|
type: file
|
||
|
|
description: FASTQ/FASTA file
|
||
|
|
pattern: "*.{fq.gz,fa.gz}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@sidorov-si"
|