nf-core_modules/modules/dragmap/hashtable/main.nf

37 lines
959 B
Text
Raw Normal View History

process DRAGMAP_HASHTABLE {
tag "$fasta"
label 'process_high'
conda (params.enable_conda ? "bioconda::dragmap=1.2.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/dragmap:1.2.1--hd4ca14e_0':
'quay.io/biocontainers/dragmap:1.2.1--hd4ca14e_0' }"
input:
path fasta
output:
path "dragmap" , emit: hashmap
path "versions.yml" , emit: versions
2022-02-04 08:53:32 +00:00
when:
task.ext.when == null || task.ext.when
script:
def args = task.ext.args ?: ''
"""
mkdir dragmap
dragen-os \\
--build-hash-table true \\
--ht-reference $fasta \\
--output-directory dragmap \\
$args \\
--ht-num-threads $task.cpus
cat <<-END_VERSIONS > versions.yml
"${task.process}":
dragmap: \$(echo \$(dragen-os --version 2>&1))
END_VERSIONS
"""
}