nf-core_modules/modules/maxquant/lfq/meta.yml

53 lines
1.4 KiB
YAML
Raw Normal View History

2021-11-16 12:26:55 +00:00
name: maxquant_lfq
2021-11-21 09:47:16 +00:00
description: Run standard proteomics data analysis with MaxQuant, mostly dedicated to label-free. Paths to fasta and raw files needs to be marked by "PLACEHOLDER"
2021-11-16 12:26:55 +00:00
keywords:
- sort
tools:
- maxquant:
description: MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. License restricted.
homepage: None
documentation: None
tool_dev_url: None
doi: ""
2022-05-16 12:30:40 +00:00
licence: ["http://www.coxdocs.org/lib/exe/fetch.php?media=license_agreement.pdf"]
2021-11-16 12:26:55 +00:00
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
2021-11-21 09:47:16 +00:00
2022-01-20 17:02:30 +00:00
- raw:
type: file
2021-11-21 09:47:16 +00:00
description: raw files with mass spectra
pattern: "*.{raw,RAW,Raw}"
- fasta:
2022-01-20 17:02:30 +00:00
type: file
2021-11-21 09:47:16 +00:00
description: fasta file with protein sequences
pattern: "*.{fasta}"
2021-11-16 12:26:55 +00:00
- parfile:
2022-01-20 17:02:30 +00:00
type: file
2021-11-16 12:26:55 +00:00
description: MaxQuant parameter file (XML)
pattern: "*.{xml}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
2021-11-16 12:26:55 +00:00
type: file
description: File containing software version
2022-01-19 14:19:09 +00:00
pattern: "versions.yml"
2021-11-16 12:26:55 +00:00
- maxquant_txt:
type: file
description: tables with peptides and protein information
pattern: "*.{txt}"
authors:
- "@veitveit"