mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
48 lines
1.3 KiB
YAML
48 lines
1.3 KiB
YAML
|
name: "mash_screen"
|
||
|
|
description: Screens query sequences against large sequence databases
|
||
|
|
keywords:
|
||
|
|
- screen
|
||
|
|
- containment
|
||
|
|
- contamination
|
||
|
|
- taxonomic assignment
|
||
|
|
tools:
|
||
|
|
- "mash":
|
||
|
|
description: Fast sequence distance estimator that uses MinHash
|
||
|
|
homepage: https://github.com/marbl/Mash
|
||
|
|
documentation: https://mash.readthedocs.io/en/latest/sketches.html
|
||
|
|
tool_dev_url: https://github.com/marbl/Mash
|
||
|
|
doi: "10.1186/s13059-016-0997-x"
|
||
|
|
licence: ["https://github.com/marbl/Mash/blob/master/LICENSE.txt"]
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- query_sketch:
|
||
|
|
type: file
|
||
|
|
description: MinHash sketch of query sequences
|
||
|
|
pattern: "*.msh"
|
||
|
|
- fastx_db:
|
||
|
|
type: file
|
||
|
|
description: Sequence files to match against
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- screen:
|
||
|
|
type: file
|
||
|
|
description: List of sequences from fastx_db similar to query sequences
|
||
|
|
pattern: "*.screen"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@mahesh-panchal"
|