2021-01-12 15:40:12 +00:00
|
|
|
#!/usr/bin/env nextflow
|
|
|
|
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
|
|
|
|
include { UCSC_BEDGRAPHTOBIGWIG } from '../../../software/ucsc/bedgraphtobigwig/main.nf' addParams( options: [:] )
|
|
|
|
|
|
|
|
workflow test_ucsc_bedgraphtobigwig {
|
|
|
|
def input = []
|
|
|
|
input = [ [ id:'test' ], // meta map
|
|
|
|
[ file('https://raw.githubusercontent.com/igvteam/igv.js/master/test/data/wig/bedgraph-example-uscs.bedgraph', checkIfExists: true) ] ]
|
|
|
|
UCSC_BEDGRAPHTOBIGWIG (
|
|
|
|
input,
|
|
|
|
file('https://raw.githubusercontent.com/igvteam/igv.js/master/test/data/wig/chrom.sizes', checkIfExists: true)
|
2021-01-15 15:46:10 +00:00
|
|
|
)
|
2021-01-12 15:40:12 +00:00
|
|
|
}
|